Publications | Prof. Chandrasekhar Kanduri Laboratory for noncoding RNA research

Home > Publications

Review: Long non-coding RNAs: definitions, functions, challenges and recommendations. John S. Mattick et al. Nature reviews molecular cell biology
Review: Long Non-Coding RNAs: Tools for Understanding and Targeting Cancer Pathways. Gaurav Kumar Pandey et al. Cancers (Basel)
HnRNPK maintains single strand RNA through controlling double-strand RNA in mammalian cells. Sagar Mahale et al. Nature communications
NBAT1/CASC15-003/USP36 control MYCN expression and its downstream pathway genes in neuroblastoma. Prasanna KJ. et al. Neuro-Oncology Advances
The long noncoding RNA TUNAR modulates Wnt signaling and regulates human β-cell proliferation. Alex XZ. et al. American Journal of Physiology-Endocrinology and Metabolism
LY6K-AS lncRNA is a lung adenocarcinoma prognostic biomarker and regulator of mitotic progression. Ali MM. et al. Oncogene
The DNA damage inducible lncRNA SCAT7 regulates genomic integrity and topoisomerase 1 turnover in lung adenocarcinoma. Luisa S. et al. NAR Cancer
Subcellular distribution of p53 by the p53-responsive lncRNA NBAT1 determines chemotherapeutic response in neuroblastoma. Mitra S. et al. Cancer research
Labeling and Purification of Temporally Expressed RNAs During the S-Phase of the Cell Cycle in Living Cells. Meryet-Figuiere M. et al. Methods in Molecular Biology
In Vivo Administration of Therapeutic Antisense Oligonucleotides. Statello L. et al. Methods in Molecular Biology
Analysis of copy number alterations reveals the lncRNA ALAL-1 as a regulator of lung cancer immune evasion. Athie A. et al. J Cell Biol
Sperm Originated Chromatin Imprints and LincRNAs in Organismal Development and Cancer. Subhash S, Kanduri M, Kanduri C. et al. iScience
Understanding Long Noncoding RNA and Chromatin Interactions: What We Know So Far. Mishra K. et al. non-coding RNA
Transcriptome-wide Profiling of Cerebral Cavernous Malformations Patients Reveal Important Long noncoding RNA molecular signatures. Subhash S. et al. Scientific Reports
BACH1 Stabilization by Antioxidants Stimulates Lung Cancer Metastasis. Clotilde W. et al. Cell
EZH2 upregulates the PI3K/AKT pathway through IGF1R and MYC in clinically aggressive chronic lymphocytic leukaemia. Subazini TK. et al. Epigenetics
FOXK1 and FOXK2 regulate aerobic glycolysis. Sukonina V. et al. Nature
Detection of RNA–DNA binding sites in long noncoding RNAs. Kuo C. et al. Nucleic Acids Research
yylncT Defines a Class of Divergently Transcribed lncRNAs and Safeguards the T-mediated Mesodermal Commitment of Human PSCs. Frank S. et al. Cell Stem Cell
H3K4me2 and WDR5 enriched chromatin interacting long non-coding RNAs maintain transcriptionally competent chromatin at divergent transcriptional units. Subhash S & Mishra K. et al. Nucleic Acids Research, gky635
Sense-antisense lncRNA pair encoded by locus 6p22.3 determines neuroblastoma susceptibility via USP36-CHD7-SOX9 gene regulatory axis. Mondal T. et al. Cancer Cell 33 (3), 417-434
PAN-cancer analysis of S-phase enriched lncRNAs identifies oncogenic drivers and biomarkers. Ali MM, Akhade VS, Kosalai ST, Subhash S, Statello L , Meryet-Figuiere M, Abrahamsson J, Mondal T and Kanduri C. Nature communications
GeneSCF: a real-time based functional enrichment tool with support for multiple organisms. Santhilal Subhash and Chandrasekhar Kanduri. BMC Bioinformatics
MEG3 long noncoding RNA regulates TGF-β pathway genes through formation of RNA-DNA triplex structures. Mondal T, Subhash S, Vaid R, Enroth S, Sireesha K , Reinius B, Mitra S, Mohammed A, James AR, Hoberg E, Moustakas A, Gyllensten U, Jones S, Gustafsson C, Sims AH, Westerlund F, Gorab E and Chandrasekhar Kanduri. Nature communications
The Risk-Associated Long Noncoding RNA NBAT-1 Controls Neuroblastoma Progression by Regulating Cell Proliferation and Neuronal Differentiation Pandey GK, Mitra S, Subhash S, Hertwig F, Kanduri M, Mishra K, Fransson S, Ganeshram A, Mondal M, Bandaru S, Östensson M, Akurek L, Abrahamsson J, Pfeifer S, Larsson E, Shi L, Peng Z, Fischer M, Martinsson T, Hedborg H, Kogner P and Chandrasekhar Kanduri. Cancer Cell 26 (5), 722–737
Temporal Separation of Replication and Transcription during S Phase Progression. Matthieu Meryet-Figuiere, Babak Alaei-Mahabadi, Sanhita Mitra, Santhilal Subhash, Gaurav Kumar Pandey, Erik Larsson and Chandrasekhar Kanduri. Cell Cycle 13:20, 3241—3248
Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation. Pandey RR, Mondal T, Mohammad F, Enroth S, Redrup L, Komorowski J, Nagano T, Mancini-Dinardo D and Chandrasekhar Kanduri. Molecular Cell. 32(2): 232-46
Characterization of the RNA content of chromatin. Tanmoy Mondal, Markus Rasmussen, Gaurav Kumar Pandey, Anders Isaksson and Chandrasekhar Kanduri. Genome Research. 20:899-907
Kcnq1ot1/Lit1 noncoding RNA mediates transcriptional silencing by targeting to the perinucleolar region. Mohammad F, Pandey RR, Nagano T, Chakalova L, Mondal T, Fraser P and Chandrasekhar Kanduri. Mol Cell Biol. 28(11):3713-28
The length of the transcript encoded from the Kcnq1ot1 antisense promoter determines the degree of silencing. Chandrasekhar Kanduri, Thakur N and Pandey RR. EMBO J. 17;25(10):2096-106
Kcnq1ot1 RNA mediates lineage-specific imprinting of genes through interacting with Dnmt1. Faizaan Mohammad, Tanmoy Mondal, Natalia Guseva, Gaurav Kumar Pandey and Chandrasekhar Kanduri. Development, 137:2493-2499
Long noncoding RNA-mediated maintenance of DNA methylation and transcriptional gene silencing. Mohammad F, Pandey GK, Mondal T, Enroth S, Redrup L, Gyllensten U and Chandrasekhar Kanduri. Development. 139:2792-2803
Antisense noncoding RNA promoter regulates the timing of de novo methylation of an imprinting control region. Guseva N, Mondal T, Chandrasekhar Kanduri. Developmental Biology. 361:403-411
An antisense RNA regulates the bidirectional silencing property of the Kcnq1 imprinting control region. Thakur N, Tiwari VK, Thomassin H, Pandey RR, Kanduri M, Gondor A, Grange T, Ohlsson R, Chandrasekhar Kanduri. Mol Cell Biol. 24:7855-62
more publications >

Last modified: January 09 2023.

Review: Long non-coding RNAs: definitions, functions, challenges and recommendations.

Review: Long Non-Coding RNAs: Tools for Understanding and Targeting Cancer Pathways.

HnRNPK maintains single strand RNA through controlling double-strand RNA in mammalian cells.

NBAT1/CASC15-003/USP36 control MYCN expression and its downstream pathway genes in neuroblastoma.

The long noncoding RNA TUNAR modulates Wnt signaling and regulates human β-cell proliferation.

LY6K-AS lncRNA is a lung adenocarcinoma prognostic biomarker and regulator of mitotic progression.

The DNA damage inducible lncRNA SCAT7 regulates genomic integrity and topoisomerase 1 turnover in lung adenocarcinoma.

Subcellular distribution of p53 by the p53-responsive lncRNA NBAT1 determines chemotherapeutic response in neuroblastoma.

Labeling and Purification of Temporally Expressed RNAs During the S-Phase of the Cell Cycle in Living Cells.

In Vivo Administration of Therapeutic Antisense Oligonucleotides.

Analysis of copy number alterations reveals the lncRNA ALAL-1 as a regulator of lung cancer immune evasion.

Sperm Originated Chromatin Imprints and LincRNAs in Organismal Development and Cancer.

Understanding Long Noncoding RNA and Chromatin Interactions: What We Know So Far.

Transcriptome-wide Profiling of Cerebral Cavernous Malformations Patients Reveal Important Long noncoding RNA molecular signatures.

BACH1 Stabilization by Antioxidants Stimulates Lung Cancer Metastasis.

EZH2 upregulates the PI3K/AKT pathway through IGF1R and MYC in clinically aggressive chronic lymphocytic leukaemia.

FOXK1 and FOXK2 regulate aerobic glycolysis.

Detection of RNA–DNA binding sites in long noncoding RNAs.

yylncT Defines a Class of Divergently Transcribed lncRNAs and Safeguards the T-mediated Mesodermal Commitment of Human PSCs.

H3K4me2 and WDR5 enriched chromatin interacting long non-coding RNAs maintain transcriptionally competent chromatin at divergent transcriptional units.

Sense-antisense lncRNA pair encoded by locus 6p22.3 determines neuroblastoma susceptibility via USP36-CHD7-SOX9 gene regulatory axis.

PAN-cancer analysis of S-phase enriched lncRNAs identifies oncogenic drivers and biomarkers.

GeneSCF: a real-time based functional enrichment tool with support for multiple organisms.

MEG3 long noncoding RNA regulates TGF-β pathway genes through formation of RNA-DNA triplex structures.

The Risk-Associated Long Noncoding RNA NBAT-1 Controls Neuroblastoma Progression by Regulating Cell Proliferation and Neuronal Differentiation

Temporal Separation of Replication and Transcription during S Phase Progression.

Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation.

Characterization of the RNA content of chromatin.

Kcnq1ot1/Lit1 noncoding RNA mediates transcriptional silencing by targeting to the perinucleolar region.

The length of the transcript encoded from the Kcnq1ot1 antisense promoter determines the degree of silencing.

Kcnq1ot1 RNA mediates lineage-specific imprinting of genes through interacting with Dnmt1.

Long noncoding RNA-mediated maintenance of DNA methylation and transcriptional gene silencing.

Antisense noncoding RNA promoter regulates the timing of de novo methylation of an imprinting control region.

An antisense RNA regulates the bidirectional silencing property of the Kcnq1 imprinting control region.