{Gene Set Clustering based on Functional annotation}

Cited articles

Subhash S. et al. Transcriptome-wide Profiling of Cerebral Cavernous Malformations Patients Reveal Important Long noncoding RNA molecular signatures.

Scientific Reports, 2019

Munir M. et al. Genome-Wide Classification of Type I, Type II and Type III Interferon-Stimulated Genes in Chicken Fibroblasts.

bioRxiv, 2019

Allen TA. et al. Circulating tumor cells exit circulation while maintaining multicellularity augmenting metastatic potential.

Journal of Cell Science, 2019

Zhao S. et al. Detailed modeling of positive selection improves detection of cancer driver genes.

Nature communications, 2019

Narykov O. et al. DISPOT: A simple knowledge-based protein domain interaction statistical potential.

Bioinformatics, 2019

Platzer A. et al. Analysis of gene expression in rheumatoid arthritis and related conditions offers insights into sex-bias, gene biotypes and co-expression patterns.


Onyema OO. et al. Eosinophils downregulate lung alloimmunity by decreasing TCR signal transduction.

Journal of Clinical Investigation, 2019

Ulke HM. et al. The oncogene ECT2 contributes to a hyperplastic, proliferative lung epithelial cell phenotype in IPF.

American Journal of Respiratory Cell and Molecular Biology, 2019

Fu B. et al. Comparative transcriptomic analysis of hypothalamus-pituitary-liver axis in bighead carp (Hypophthalmichthys nobilis) with differential growth rate.

BMC Genomics, 2019

Sukonina V. et al. FOXK1 and FOXK2 regulate aerobic glycolysis.

Nature, 2019

Brian H. et al. Comparative Analysis of Normalization Methods for Network Propagation.

Front. Genet., 2019

Wernig-Zorc S. et al. Global distribution of DNA hydroxymethylation and DNA methylation in chronic lymphocytic leukemia.

Epigenetics & Chromatin, 2019

Subhash S & Mishra K. et al. H3K4me2 and WDR5 enriched chromatin interacting long non-coding RNAs maintain transcriptionally competent chromatin at divergent transcriptional units.

Nucleic Acids Research, 2018

Choy CT. et al. Embedding of Genes Using Cancer Gene Expression Data: Biological Relevance and Potential Application on Biomarker Discovery.

Front Genet., 2018

Zhao S. et al. Model-based analysis of positive selection significantly expands the list of cancer driver genes, including RNA methyltransferases.

bioRxiv, 2018

James AR. et al. Long non-coding RNAs defining major subtypes of B cell precursor acute lymphoblastic leukemia.

bioRxiv 2018

Morton MC. et al. Neonatal subventricular zone neural stem cells release extracellular vesicles that Act as a microglial morphogen.

Cell Reports 2018

Mondal T. et.al. Sense-antisense lncRNA pair encoded by locus 6p22.3 determines neuroblastoma susceptibility via USP36-CHD7-SOX9 gene regulatory axis.

Cancer cell 2018

Ali MM. et.al. PAN-cancer analysis of S-phase enriched lncRNAs identifies oncogenic drivers and biomarkers.

Nature communications 2018

Singh A. et.al. TuBA: Tunable Biclustering Algorithm Reveals Clinically Relevant Tumor Transcriptional Profiles in Breast Cancer.

bioRxiv 2018

Nguyen Hal X. et.al. Systemic neutrophil depletion modulates the migration and fate of transplanted human neural stem cells to rescue functional repair.

Journal of Neuroscience 2017

Hoang Van L.T. et.al. RNA-seq reveals more consistent reference genes for gene expression studies in human non-melanoma skin cancers.

PeerJ 2017

Subhash S. et.al. Global DNA methylation profiling reveals new insights into epigenetically deregulated protein coding and long noncoding RNAs in CLL.

Clinical epigenetics 2016

Von der Heide E.K. et.al. Molecular alterations in bone marrow mesenchymal stromal cells derived from acute myeloid leukemia patients.

Leukemia 2016

Mondal T. et.al. MEG3 long noncoding RNA regulates TGF-β pathway genes through formation of RNA-DNA triplex structures.

Nature communications 2015

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